{ "_id": "6ad5d08c7f75c4fbd3a1e8a3", "Package": "clusternomics", "Type": "Package", "Title": "Integrative Clustering for Heterogeneous Biomedical Datasets", "Version": "0.1.1", "Author": "Evelina Gabasova", "Maintainer": "Evelina Gabasova ", "Description": "Integrative context-dependent clustering for heterogeneous\nbiomedical datasets. Identifies local clustering structures in\nrelated datasets, and a global clusters that exist across the\ndatasets.", "License": "MIT + file LICENSE", "URL": "https://github.com/evelinag/clusternomics", "BugReports": "https://github.com/evelinag/clusternomics/issues", "RoxygenNote": "5.0.1", "VignetteBuilder": "knitr", "Repository": "https://evelinag.r-universe.dev", "Date/Publication": "2017-03-14 13:56:55 UTC", "RemoteUrl": "https://github.com/evelinag/clusternomics", "RemoteRef": "HEAD", "RemoteSha": "ebccead47a895d513a8e4641acb49f7638f17151", "NeedsCompilation": "no", "Packaged": { "Date": "2026-10-19 08:04:07 UTC", "User": "root" }, "_user": "evelinag", "_type": "src", "_file": "clusternomics_0.1.1.tar.gz", "_fileid": "https://r2.ropensci.org/442f6c941c2327c190ffef5fa67dcfb621290c70c079cc28d02e4e1227ae6569", "_filesize": 562791, "_sha256": "442f6c941c2327c190ffef5fa67dcfb621290c70c079cc28d02e4e1227ae6569", "_expires": "2027-01-27T08:10:51.000Z", "_created": "2026-10-19T08:04:07.000Z", "_published": "2026-10-19T08:10:52.769Z", "_buildurl": "https://github.com/r-universe/evelinag/actions/runs/39219704226", "_status": "success", "_host": "GitHub-Actions", "_jobs": [ { "job": 117953366335, "time": 270, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "12171726511" }, { "job": 117953366284, "time": 270, "config": "linux-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "12171084425" }, { "job": 117953366333, "time": 262, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "12170539876" }, { "job": 117953366249, "time": 235, "config": "macos-release-arm64", "r": "4.6.1", "check": "OK", "artifact": "12171069704" }, { "job": 117951991182, "time": 220, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "12171227523" }, { "job": 117953366307, "time": 96, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "12171750430" }, { "job": 117953366266, "time": 266, "config": "windows-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "12170924813" }, { "job": 117953366440, "time": 249, "config": "windows-oldrel-x86_64", "r": "4.5.3", "check": "OK", "artifact": "12171337842" }, { "job": 117953366275, "time": 265, "config": "windows-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "12171541895" } ], "_upstream": "https://github.com/evelinag/clusternomics", "_commit": { "id": "ebccead47a895d513a8e4641acb49f7638f17151", "author": "Evelina Gabasova ", "committer": "Evelina Gabasova ", "message": "Shortened test run times\n", "time": 1489499815 }, "_maintainer": { "name": "Evelina Gabasova", "email": "egabasova@gmail.com", "login": "evelinag", "orcid": "0000-0002-3707-0657", "description": "", "uuid": 5541162 }, "_distro": "resolute", "_registered": true, "_dependencies": [ { "package": "magrittr", "role": "Imports" }, { "package": "plyr", "role": "Imports" }, { "package": "MASS", "role": "Imports" }, { "package": "knitr", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" }, { "package": "testthat", "role": "Suggests" }, { "package": "mclust", "role": "Suggests" }, { "package": "gplots", "role": "Suggests" }, { "package": "ggplot2", "role": "Suggests" } ], "_owner": "evelinag", "_selfowned": true, "_usedby": 0, "_updates": [], "_tags": [], "_stars": 16, "_contributors": [ { "user": "evelinag", "count": 30, "uuid": 5541162 } ], "_userbio": { "uuid": 5541162, "type": "user", "name": "Evelina Gabasova", "followers": 333 }, "_downloads": { "count": 447, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/clusternomics" }, "_mentions": 1, "_devurl": "https://github.com/evelinag/clusternomics", "_searchresults": 15, "_rbuild": "4.6.1", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/clusternomics.html", "extra/contents.json", "extra/manual.pdf", "extra/readme.html", "extra/readme.md", "LICENSE" ], "_homeurl": "https://github.com/evelinag/clusternomics", "_realowner": "evelinag", "_cranurl": true, "_releases": [ { "version": "0.1.0", "date": "2016-08-01" }, { "version": "0.1.1", "date": "2017-03-14" } ], "_exports": [ "clusterSizes", "coclusteringMatrix", "contextCluster", "empiricalBayesPrior", "generatePrior", "generateTestData_1D", "generateTestData_2D", "numberOfClusters" ], "_help": [ { "page": "clusterSizes", "title": "Estimate sizes of clusters from global cluster assignments.", "topics": [ "clusterSizes" ] }, { "page": "coclusteringMatrix", "title": "Compute the posterior co-clustering matrix from global cluster assignments.", "topics": [ "coclusteringMatrix" ] }, { "page": "contextCluster", "title": "Clusternomics: Context-dependent clustering", "topics": [ "contextCluster" ] }, { "page": "empiricalBayesPrior", "title": "Fit an empirical Bayes prior to the data", "topics": [ "empiricalBayesPrior" ] }, { "page": "generatePrior", "title": "Generate a basic prior distribution for the datasets.", "topics": [ "generatePrior" ] }, { "page": "generateTestData_1D", "title": "Generate simulated 1D dataset for testing", "topics": [ "generateTestData_1D" ] }, { "page": "generateTestData_2D", "title": "Generate simulated 2D dataset for testing", "topics": [ "generateTestData_2D" ] }, { "page": "numberOfClusters", "title": "Estimate number of clusters from global cluster assignments.", "topics": [ "numberOfClusters" ] } ], "_readme": "https://github.com/evelinag/clusternomics/raw/HEAD/README.md", "_rundeps": [ "magrittr", "MASS", "plyr", "Rcpp" ], "_vignettes": [ { "source": "using-clusternomics.Rmd", "filename": "using-clusternomics.html", "title": "Context-dependent clustering with Clusternomics", "author": "Evelina Gabasova", "engine": "knitr::rmarkdown", "headings": [ "Simulated data", "Algorithm setup", "Analysing clustering results", "Choosing number of clusters", "Posterior number of clusters", "Sizes of clusters", "Obtaining global clusters", "Co-clustering matrix", "Adjusted Rand index" ], "created": "2016-07-25 10:26:15", "modified": "2017-03-13 23:01:02", "commits": 3 } ], "_score": 5.079181246047625, "_indexed": true, "_nocasepkg": "clusternomics", "_universes": [ "evelinag" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "0.1.1", "date": "2026-10-19T08:05:58.000Z", "distro": "resolute", "commit": "ebccead47a895d513a8e4641acb49f7638f17151", "fileid": "https://r2.ropensci.org/47260fb435076b18e62b167ff75f55e1068877a6794889e00775ff5914ec52da", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/evelinag/actions/runs/39219704226" }, { "r": "4.6.1", "os": "linux", "version": "0.1.1", "date": "2026-10-19T08:06:02.000Z", "distro": "resolute", "commit": "ebccead47a895d513a8e4641acb49f7638f17151", "fileid": "https://r2.ropensci.org/3fac6f3333c346b13e3936beb2d6ce42d09de8519945fffbbc940deb54c0f497", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/evelinag/actions/runs/39219704226" }, { "r": "4.5.3", "os": "mac", "version": "0.1.1", "date": "2026-10-19T08:07:41.000Z", "commit": "ebccead47a895d513a8e4641acb49f7638f17151", "fileid": "https://r2.ropensci.org/37a8204a10a135f0847dac6d751258b0f400adcf77a5483f7a55802d529dc2e8", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/evelinag/actions/runs/39219704226" }, { "r": "4.6.1", "os": "mac", "version": "0.1.1", "date": "2026-10-19T08:08:05.000Z", "commit": "ebccead47a895d513a8e4641acb49f7638f17151", "fileid": "https://r2.ropensci.org/2c8054ec07f5f485c6fa53c3f2b7ce31d85b63adb4e6f9d6786df26ce69fe240", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/evelinag/actions/runs/39219704226" }, { "r": "4.6.0", "os": "wasm", "version": "0.1.1", "date": "2026-10-19T08:05:58.000Z", "commit": "ebccead47a895d513a8e4641acb49f7638f17151", "fileid": "https://r2.ropensci.org/91c29f2c33291b0ee91ae1b010011d975e96f4a01814fe2d9cb586167684bb42", "status": "success", "buildurl": "https://github.com/r-universe/evelinag/actions/runs/39219704226" }, { "r": "4.7.0", "os": "win", "version": "0.1.1", "date": "2026-10-19T08:05:22.000Z", "commit": "ebccead47a895d513a8e4641acb49f7638f17151", "fileid": "https://r2.ropensci.org/15770b29479eaa737b18f24d71f17b8c146bfaf414403d5806f9f356b3254c9a", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/evelinag/actions/runs/39219704226" }, { "r": "4.5.3", "os": "win", "version": "0.1.1", "date": "2026-10-19T08:05:22.000Z", "commit": "ebccead47a895d513a8e4641acb49f7638f17151", "fileid": "https://r2.ropensci.org/aea7683aa4aff7da17d1381d9a11ccf484709e489347919774e789fdb5ab2fad", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/evelinag/actions/runs/39219704226" }, { "r": "4.6.1", "os": "win", "version": "0.1.1", "date": "2026-10-19T08:05:33.000Z", "commit": "ebccead47a895d513a8e4641acb49f7638f17151", "fileid": "https://r2.ropensci.org/bd6c7c5c72a4dfd11173bdff739877be79dc74fff8201e34f9f770f67b97326c", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/evelinag/actions/runs/39219704226" } ] }