Package: clusternomics 0.1.1
clusternomics: Integrative Clustering for Heterogeneous Biomedical Datasets
Integrative context-dependent clustering for heterogeneous biomedical datasets. Identifies local clustering structures in related datasets, and a global clusters that exist across the datasets.
Authors:
clusternomics_0.1.1.tar.gz
clusternomics_0.1.1.zip(r-4.5)clusternomics_0.1.1.zip(r-4.4)clusternomics_0.1.1.zip(r-4.3)
clusternomics_0.1.1.tgz(r-4.4-any)clusternomics_0.1.1.tgz(r-4.3-any)
clusternomics_0.1.1.tar.gz(r-4.5-noble)clusternomics_0.1.1.tar.gz(r-4.4-noble)
clusternomics_0.1.1.tgz(r-4.4-emscripten)clusternomics_0.1.1.tgz(r-4.3-emscripten)
clusternomics.pdf |clusternomics.html✨
clusternomics/json (API)
| # Install 'clusternomics' in R: |
| install.packages('clusternomics', repos = c('https://evelinag.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/evelinag/clusternomics/issues
Last updated 8 years agofrom:ebccead47a. Checks:OK: 7. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Oct 31 2024 |
| R-4.5-win | OK | Oct 31 2024 |
| R-4.5-linux | OK | Oct 31 2024 |
| R-4.4-win | OK | Oct 31 2024 |
| R-4.4-mac | OK | Oct 31 2024 |
| R-4.3-win | OK | Oct 31 2024 |
| R-4.3-mac | OK | Oct 31 2024 |
Exports:clusterSizescoclusteringMatrixcontextClusterempiricalBayesPriorgeneratePriorgenerateTestData_1DgenerateTestData_2DnumberOfClusters
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Estimate sizes of clusters from global cluster assignments. | clusterSizes |
| Compute the posterior co-clustering matrix from global cluster assignments. | coclusteringMatrix |
| Clusternomics: Context-dependent clustering | contextCluster |
| Fit an empirical Bayes prior to the data | empiricalBayesPrior |
| Generate a basic prior distribution for the datasets. | generatePrior |
| Generate simulated 1D dataset for testing | generateTestData_1D |
| Generate simulated 2D dataset for testing | generateTestData_2D |
| Estimate number of clusters from global cluster assignments. | numberOfClusters |
